CellPathfinder is designed for our HCA systems, CQ1 and the CellVoyager series. From beginners to experts, the analysis software lets you quantify subtle physiological changes and even label-free samples with various graph options.
Note:
Software performance is guaranteed only if CellPathfinder Software is installed on a PC designated by Yokogawa. CellPathfinder Software can be used by customer’s own Workstation. Although it can not be guaranteed that it operates normally, so please fully check the operation with a free trial version etc. Specification of workstation recommended by Yokogawa is below:
Work Station
The specification of the workstation for CellPathfinder that Yokogawa offers are as follows.
| Model |
Dell Precision |
|---|---|
| CPU | Intel Xeon |
| Memory | 128GB |
| HDD | System Drive(C):4TB Data Drive(D):4TB |
| OS | Microsoft Windows10 IoT Enterprise |
| GPU | Quadro P620 Quadro RTX5000 or NVIDIA RTX A4500 |
| Interface |
Mini DisplayPort x4 (Mini DisplayPort to DisplayPort adapter) |
| Monitor |
2x 24 in. wide monitors, 1920 x 1200 Pixels |
If a customer wishes to prepare your own workstation, please refer to the following.
| Resource | Basic Pack | With Machine Learning Option | With Deep Learning Option | ||
|---|---|---|---|---|---|
| Minimum specification*3 | Recommended specification | Minimum specification | Recommended specification | Recommended specification | |
| CPU |
Intel Xeon |
Intel Xeon (PassMark score*1 8479) or faster equivalent
|
|||
|
GPU |
NVIDIA Quadro |
NVIDIA Quadro (PassMark score*1 3469)
|
Quadro RTX5000 or NVIDIA RTX A4500 |
||
|
RAM |
32GB |
64GB |
128GB*2 | ||
| Storage |
200MB of free disk space |
1st: 2TB 2nd :4TB |
|||
| Monitor |
1920 x 1080 |
1920 x 1200 x 2 |
|||
| Network | 1 node | 10GbE 1 node | |||
| OS |
Windows10 22H2*464bit |
||||
*1 PassMark score is one of the benchmarks used to evaluate hardware performance.
*2 When analyzing tiled images using the Machine Learning option, 128 GB of memory is recommended.
*3 This specification is not recommended for automatic analysis.
*4 This is the recommended version as of November 2023.
Software
Please download a file [CellPathfinder_Installer_R3.07.01 (756 MB)]. To use CellPathfinder, the activation code is required.
Right-click the downloaded ZIP file, select "Properties", check "Unblock" in the figure below, click the "OK" button, and then unzip the ZIP file.
Please install by referring to "Install_Manual [IM_80K01B02-01E-010].pdf" in the unzipped folder.
In case of installing Deep Learning Option, download [CellPathfinder_Installer_R.3.07.01_DeepLearning (3.69 GB)] and unzip the ZIP file by the same procedure as described above. Then install by referring to "Install Manual [IM_80K01B03-01E_006.pdf]" in the unzipped folder.
Fill in the request sheet and send to us by e-mail.
| CellPathfinder_Install_R3.07.01 (756 MB) | Download |
|---|---|
| CellPathfinder_Installer_R.3.07.01_DeepLearning (3.69 GB) | Download |
Tutorial
We prepared tutorials that explains how to use CellPathfinder in an easy-to-understand manner.
| CellCycle | Tutorial page |
|---|---|
| NFkB | Tutorial page |
| Neurite Outgrowth | Tutorial page |
| Collapsed Fibers | Tutorial page |
| HeLa(CE Bright Field) | Tutorial page |
| Spheroid | Tutorial page |
| Angiogenesis | Tutorial page |
| Calcium Imaging | Tutorial page |
| Tracking | Tutorial page |
| Manual Region Specified Analysis through Tiling | Tutorial page |
| Dots in cells | Tutorial page |
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