CellPathfinder is designed for our HCA systems, CQ1 and the CellVoyager series. From beginners to experts, the analysis software lets you quantify subtle physiological changes and even label-free samples with various graph options.
Note:
Software performance is guaranteed only if CellPathfinder Software is installed on a PC designated by Yokogawa. CellPathfinder Software can be used by customer’s own Workstation. Although it can not be guaranteed that it operates normally, so please fully check the operation with a free trial version etc. Specification of workstation recommended by Yokogawa is below:
Workstation
The specification of the workstation for CellPathfinder that Yokogawa offers are as follows.
Model |
Dell Precision |
---|---|
CPU | Intel Xeon |
Memory | 128GB |
HDD | System Drive(C):4TB Data Drive(D):4TB |
OS | Microsoft Windows10 IoT Enterprise |
GPU | Quadro P620 Quadro RTX5000 or NVIDIA RTX A4500 |
Interface |
Mini DisplayPort x4 (Mini DisplayPort to DisplayPort adapter) |
Monitor |
Two 27 in. wide monitors, 2560 x 1440 Pixels |
If a customer wishes to prepare your own workstation, please refer to the following.
Resource | Basic Pack | With Machine Learning Option | With Deep Learning Option | ||
---|---|---|---|---|---|
Minimum specification*3 | Recommended specification | Minimum specification | Recommended specification | Recommended specification | |
CPU |
Intel Xeon |
Intel Xeon (PassMark score*1 8479) or faster equivalent
|
|||
GPU |
NVIDIA Quadro |
NVIDIA Quadro (PassMark score*1 3469)
|
Quadro RTX5000 or NVIDIA RTX A4500 |
||
RAM |
32GB |
64GB |
128GB*2 | ||
Storage |
200MB of free disk space |
1st: 2TB 2nd :4TB |
|||
Monitor |
1920 x 1080 |
Two 1920 x 1200 or Two 2560 x 1440 |
|||
Network | 1 node | 10GbE 1 node | |||
OS |
Windows 10 22H2*4 64-bit or Windows 11 Pro 23H2*4 64-bit |
*1 PassMark score is one of the benchmarks used to evaluate hardware performance.
*2 When analyzing tiled images using the Machine Learning option, 128 GB of memory is recommended.
*3 This specification is not recommended for automatic analysis.
*4 This is the recommended version as of May 2024.
Software
Please download a file [CellPathfinder_Installer_R3.07.02 (757 MB)]. To use CellPathfinder, the activation code is required.
Right-click the downloaded ZIP file, select "Properties", check "Unblock" in the figure below, click the "OK" button, and then unzip the ZIP file.
Please install by referring to "Install_Manual [IM_80K01B02-01E-011].pdf" in the unzipped folder.
In case of installing Deep Learning Option, download [CellPathfinder_Installer_R.3.07.02_DeepLearning (3.69 GB)] and unzip the ZIP file by the same procedure as described above. Then install by referring to "Install Manual [IM_80K01B03-01E_007.pdf]" in the unzipped folder.
Fill in the request sheet and send to us by e-mail.
CellPathfinder_R3.07.02 (757 MB) | Download |
---|---|
CellPathfinder_Installer_R.3.07.02_DeepLearning (3.69 GB) | Download |
Tutorial
We prepared tutorials that explains how to use CellPathfinder in an easy-to-understand manner.
CellCycle | Tutorial page |
---|---|
NFkB | Tutorial page |
Neurite Outgrowth | Tutorial page |
Collapsed Fibers | Tutorial page |
HeLa(CE Bright Field) | Tutorial page |
Spheroid | Tutorial page |
Angiogenesis | Tutorial page |
Calcium Imaging | Tutorial page |
Tracking | Tutorial page |
Manual Region Specified Analysis through Tiling | Tutorial page |
Dots in cells | Tutorial page |
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